Yes, I hate to blame PMS, but it appears so, lol.
I have a female (in a separate colony obviously) that HATES my neutered male and is EXTREMELY territorial. If he gets anywhere near her, she LOSES it and lunges, attacks, crabs, flicks her tail back and forth, and quivers. If they happened to be in the same space together (back when I thought play dates might get them to like each other) she would stay as far away from him as possible and be stuck in "high alert." Fortunately for you, my glider's territorial behavior does not sound ANYTHING like what you described. :) Food and sleeping space are the first two things that get fought over in a territory battle, and since your female is sharing both, I doubt that she's trying to kick the male out of the cage.
If the chasing subsides, it could have been due to your female's cycle, the moon cycle, a large bug or mouse in your house, etc. Having a second colony of gliders could cause the dynamic between these two to change, but if they're your only pair, that possibility is off the table.
I'm not sure what type of toys you have, but maybe she's bored and needs a better wheel. (I saved up for a while before I upgraded to stealth wheels, and boy were they worth it!) If you can't identify anything else and neither glider starts showing the signs I mentioned (crabbing, lunging with crabbing, balling up to fight, shivering, or cobra-like tail undulations), then yeah, her cycle is probably making her crazy, and it will pass.