If it's related to food aggression, it will take a while to die down. The gliders need to learn food will always be available. What are you feeding them, and how much? Putting extra food in might help.
The alpha is probably just in overdrive with all the new scents and new cage, etc. He feels he needs to assert his dominance and he will do so until he feels safe in his role. It could be that the less dominant guy is trying for the alpha title. If that's the case, they will keep bickering until one gives up. If that's what they're doing, separating them will just prolong the battles. I think separating them nightly is a terrible idea though. It'll cause stress 2x a day, Both when they are separated to be alone all night, then again with another reintro every morning. I don't think it will solve the dominance issues either since added frustration and stress in a glider rarely fixes issues, it usually makes behaviours worse. You might also begin to see signs of depression or stereotypy since they'd both be alone for their most active time period, while knowing another glider is nearby.
Do you know much on their history? Have they always gotten along or did they fight with their previous owner?
Is there any way to get a video of the behaviour? It's hard to tell if it's normal dominance establishing that you would let sort itself out or if it's the more vicious fighting of two intact males that simply can't live together anymore. Sometimes that just happens with intact males, once they reach a certain age.
Neutering will reduce a lot of this behaviour. Really push for a neuter ASAP for at least the most dominant male. Better to do them one at a time than separate or have to spray them down multiple times a night. The spray bottle will most likely work, but won't be conductive to bonding or making them feel safe in your house. The dominant male won't associate the spray with the "humping", since he's acting on instinct. And the less dominant male, not only is he getting dominated, he's also getting sprayed. They will learn to fear you coming to their cage.
If the fighting is bad enough that you have to separate, it would probably be better to just keep them separate until neuters and then reintro. If you do this, just make sure they each have a wheel and continue to scent swap their sleeping pouches so they will stay familiar with each other's scent.