So, my glider, Luna, really needs a friend. Therefore I've been starting to do research on intros/quarantine. I obviously have no real life experience with this, and I haven't done nearly as much research as I want to, but what type of places are they in when they do that? A lot of the research/reading I've done says you should switch their sleeping pouches and stuff first. It's to let them get used to each other's' smells (they're so scent-oriented).
You mentioned that you will sometimes put them in one of the cages. Maybe they realize that the space their in belongs to one of them but not the other. Perhaps this wouldn't be as much of a problem in a neutral space? Like, completely clean the cages first. Or, I've heard people on here talk about using the bathtub as a neutral space. Perhaps you could try that? Or maybe a pop-up tent which is free from either glider's smell?
Ultimately, I'm really not sure how to interpret the behavior you're describing. I hope someone more knowledgeable can shed insight on the situation. I just wanted to share the suggestion of a scent-neutral space.